List of Publications

Recent Publications

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2019
1.	Shintaro Maruyama, Kano Suzuki, Motonori Imamura, Hikaru Sasaki, Hideyuki Matsunami, Kenji Mizutani, Yasuko Saito, Fabiana L. Imai, Yoshiko Ishizuka-Katsura, Tomomi Kimura-Someya, Mikako Shirouzu, Takayuki Uchihashi, Toshio Ando, Ichiro Yamato & Takeshi Murata, Metastable asymmetrical structure of shaftless V₁ motor, Sci. Adv. (in press).
2.	S. Kori, L. Ferry, S. Matano, T. Jimenji, N. Kodera, T. Tsusaka, R. Matsumura, T. Oda, M. Sato, N. Dohmae N, T. Ando, Y. Shinkai, P. A. Defossez and K. Arita, "Structure of the UHRF1 Tandem Tudor Domain bound to a methylated non-histone protein, LIG1, reveals rules for binding and regulation". Structure (in press) DOI: 10.1016/j.str.2018.11.012
3.	E. Sone, D. Noshiro, Y. Ikebuchi, M. Nakagawa, M. Khan, Y. Tamura, M. Ikeda, M. Oki, R. Murali, T. Fujimori, T. Yoda, M. Honma, H. Suzuki, T., and K. Aoki, "The clustering-induction of RANKL molecules could stimulate early osteroblast differentiation", Biophys. Biochem. Res. Commun. (in press)
4.	T. Haruyama, Y. Sugano, N. Kodera, T. Uchihashi, T. Ando, Y. Tanaka, H. Konno, and T. Tsukazaki, "Single-unit imaging of membrane protein-embedded nanodiscs from two oriented sides by high-speed atomic force microscopy", Structure 27, 152-160 (2019). DOI: 10.1016/j.str.2018.09.005.
2018
1.	T. Brouns, H. De. Keersmaecker, S. Konrad, N. Kodera, T. Ando, J. Lipfert, S. De Feyter and W. Vanderlinden, "Free energy landscape and dynamics of supercoiled DNA by high-speed tomic force microscopy", ACS Nano 12 (12), 11907–11916 (2018). DOI: 10.1021/acsnano.8b06994.
2.	T. Ando et al., "Topical Review: The 2018 correlative microscopy techniques roadmap", J. Phys. D: Appl. Phys. 51, 443001 (42pp) (2018). DOI: 10.1088/1361-6463/aad055 Open Access (PDF)
3.	T. Mori, S. Sugiyama, M. Byme, C. H. Johnson, T. Uchihashi, T. Ando, "Revealing circadian mechanisms of integration and resilience by visualizing clock proteins working in real time", Nature Commun. 9:3245 (13 pages) (2018). DOI: 10.1038/s41467-018-05438-4. Oepn Access (PDF) (Link)
4.	T. Uchihashi, Y. Watanabe, Y. Nakazaki, T. Yamasaki, H. Watanabe, T. Maruno, K. Ishii, S. Uchiyama, C. Song, K. Murata, R. Iino, and T. Ando, "Dynamic structural states of ClpB involved in its disaggregation function", Nature Commun. 9:2147 (12 pages) (2018). DOI: 10.1038/s41467-018-04587-w. Open Access (PDF) (Link).
5.	T. Ravula, D. Ishikuro, N. Kodera, T. Ando, G. Anantharamaiah, A. Ramamoorthy, "Real time monitoring of lipid exchange via fusion of peptide based lipid-nanodiscs", Chem. Mater 30, 3204-3207 (2018). DOI: 10.1021/acs.chemmater.8b00946
6.	T. Umakoshi, H. Udaka, T. Uchihashi, T. Ando, M. Suzuki, "Quantum-dot antibody conjugation visualized at the single-molecule scale with high-speed aomic force microscopy", Colloids and Surfaces B: Biointerfaces 167: 267-274 (2018). DOI: 10.1016/j.colsurfb.2018.04.015 (Link)
7.	D. Noshiro and T. Ando, "Substrate protein dependence of GroEL-GroES interaction cycle revealed by high-speed AFM imaging", Philosophical Transactions B 373: 20170180 (2018). DOI: /10.1098/rstb.2017.0180. Open Access (PDF) (Link) Supplementary Information, Movie1, Movie 2, Movie 3
8.	N. Terahara, Y. Inoue, N. Kodera, Y. V. Morimoto, T. Uchihashi, K. Imada, T. Ando, K. Namba, and T. Minamino, "Insight into structural remodeling of the FlhA ring responsible for bacterial flagellar type III protein export", Sci. Adv. 4 (4), eaao7054.DOI: 10.1126/sciadv.aao7054 (Link)
9.	T. Haruyama, T. Uchihashi, Y. Yamada, N. Kodera, T. Ando and H. Konno, "Negatively charged lipids are essential for functional and structural switch of human 2-Cys peroxiredoxin II", J. Mol. Biol. 430(5):602-610 (2018). DOI: /10.1016/j.jmb.2017.12.020 (Link)
10.	T. Takeda, T. Kozai, H. Yang, D. Ishikuro, K. Seyama, Y Kumagai, T. Abe, H. Yamada, T. Uchihashi, T. Ando, K. Takei, "Dynamic clustering of dynamin-amphiphysin helices regulates membrane constriction and fission coupled with GTP hydrolysis", e-Life 7:e30246 (19 pages) (2018). DOI: /10.7554/eLife.30246 (Link)
2017
1.	T. Ando, High-speed atomic force microscopy and its future prospects. Biophys. Rev. 10:285–292 (2018). DOI: 10.1007/s12551-017-0356-5 (Shared PDF) This is a part of Special Issue on "Biomolecules to Bionanommechanics -- Fumio Arisaka's 70th Birthday".
2.	Mikihiro Shibata, Hiroshi Nishimasu, Noriyuki Kodera, Seiichi Hirano, Toshio Ando, Takayuki Uchihashi & Osamu Nureki. Real-space and real-time dynamics of CRISPR-Cas9 visualized by high-speed atomic force microscopy. Nat. Commun. 8, 1430 (9 pp) (2017). DOI: 10.1038/s41467-017-01466-8, Open Access (PDF)
3.	N. Terahara, N. Kodera, T. Uchihashi, T. Ando, K. Namba, T Minamino, "Na⁺-induced structurak transition of MotPS for stator assembly of the Bacillus fragellar motor", Sci. Adv. 3, eaao4119 (9 pp) (2017). DOI: 10.1126/sciadv.aao4119 (Link)
4.	M. Shibata, H. Watanabe, T. Uchihashi, T. Ando, R. Yasuda, “High-speed atomic force microscopy imaging of live mammalian cells”, Biophys. Physicobiol. 14, 127-135 (2017). DOI: 10.2142/biophysico.14.0_127
5.	S. Watanabe and T. Ando, "High-speed XYZ nanopositioner for scanning ion conductance microscopy", Appl. Phys. Lett. 111, 113106 (2017); doi: 10.1063/1.4993296
6.	S. Matsui, S. Hiroshige, T. Kureha, M. Shibata, T. Uchihashi, D. Suzuki, “Fast Adsorption of Soft Hydrogel Microspheres on Solid Surfaces in Aqueous Solutions” Angew. Chem. Int. Ed. 56, 12146-12149 (2017)..
7.	J. J. Keya, D. Inoue, Y. Suzuki, T. Kozai, D. Ishikuro, N. Kodera, T. Uchihashi, A. M. R. Kabir, M. Endo, K. Sada, and A. Kakugo, “High-Resolution Imaging of a Single Gliding Protofilament of Tubulins by HS-AFM”, Sci. Rep. 7, 6166 (2017).
8.	A. Sumino, T. Uchihashi, S. Oiki, “Oriented Reconstitution of the Full-Length KcsA Potassium Channel in a Lipid Bilayer for AFM Imaging”, J. Phys. Chem. Lett. 8, 785-793 (2017).
9.	T. Ando, "Directly watching biomolecules in action by high-speed atomic force microscopy", Biophys. Rev. 9, 421-429 (2017). DOI: 10.1007/s12551-017-0281-7 This is a part of a Special Issue for IUPAB Edinburgh Congress 2017, (Link)
10.	M S Mohamed, A. Kobayashi, A. Taoka, T. Watanabe-Nakayama, Y. Kikuchi, M. Hazawa, T. Minamoto,Y. Fukumori, N. Kodera, T. Uchihashi, T. Ando, and R. W. Wong, “High-speed atomic force microscopy reveals loss of nuclear pore resilience as a dying code in colorectal cancer cells”, ACS Nano 11, 5567−5578 (2017). DOI: 10.1021/acsnano.7b00906
11.	Yves F. Dufrêne, Toshio Ando, Ricardo Garcia, David Alsteens, David Martinez-Martin, Andreas Engel, Christoph Gerber and Daniel J. Müller, "Imaging modes of atomic force microscopy for application of molecular and cell biology", Nat. Nanotechnol. 12, 295-307 (2017). DOI: 10.1038/NNANO.2017.45 (Link)
12.	T. Ando, "High-speed Atomic Force Microscopy for Observing Protein Molecules in Dynamic Action", Proceedings of SPIE 10328, Selected Papers from the 31st International Congress on High-Speed Imaging and Photonics, 103281R (February 20, 2017). DOI:10.1117/12.2268795
2016
1.	K. Inoue, S. Ito, Y. Kato, Y. Nomura, M. Shibata, T. Uchihashi, S. Tsunoda, and H. Kandori, “Natural light-driven inward proton pump.” Nat. Commun. 7: 13415 (2016). DOI: 10.1038/ncomms13415
2.	D. Yamamoto and T. Ando Chaperonin GroEL-GroES functions as both alternating and non-alternating engines, J. Mol. Biol. 428, 3090-3101 (2016). DOI: 10.1016/j.jmb.2016.06.017 (Link) (Movie S1)
3.	Hayashi Yamamoto, Yuko Fujioka, Sho W. Suzuki, Daisuke Noshiro, Hironori Suzuki, Chika Kondo-Kakuta, Yayoi Kimura, Hisashi Hirano, Toshio Ando, Nobuo N. Noda, Yoshinori Ohsumi The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes, Dev. Cell 38:86-99 (2016). DOI: 10.1016/j.devcel.2016.06.015. (PDF) (Open Access)
4.	T. Watanabe-Nakayama, M. Itami, N. Kodera, T. Ando and H. Konno High-speed atomic force microscopy reveals strongly polarized movement of clostridial collagenase along collagen fibrils, Sci. Rep. 6:28975 (2016). DOI: 10.1038/srep28975. (Link)
5.	T. Uchihashi, H. Watanabe, S. Fukuda, M. Shibata and T. Ando "Functional extension of high-speed atomic force microscopy", Ultramicroscopy 160, 182-196 (2016). DOI: 10.1016/j.ultramic.2015.10.017 (Link)
2015
1.	Wilaiwan Sriwimol, Aratee Aroonkesorn, Somsri Sakdee, Chalermpol Kanchanawarin, Takayuki Uchihashi, Toshio Ando and Chanan Angsuthanasombat "Potential pre-pore trimer formation by the Bacillus thuringiensis mosquito-specific toxin: Molecular insights into a critical prerequisite of membrane-bound monomers", J. Biol. Chem. 290 (34), 20793-20803 (2015). DOI: 10.1074/jbc.M114.627554 (Link)
2.	Shingo Fukuda, Takayuki Uchihashi, Toshio Ando "Method of mechanical holding of cantilever chip for tip-scan high-speed atomic force microscopy", Rev. Sci. Instrum. 86, 063703 (2015). DOI: 10.1063/1.4922381 (Link)
3.	Kouta Takeda, Takayuki Uchihashi, Hiroki Watanabe, Takuya Ishida, Kiyohiko Igarashi, Nobuhumi Nakamura, Hiroyuki Ohno, "Real-time dynamic adsorption processes of cytochrome c on an electrode observed through electrochemical high-speed atomic force microscopy", PLoS One e0116685 (10 pages), (2015). DOI:10.1371/journal.pone.0116685 (Link)
4.	T. Davies, N. Kodera, G. S. Kaminski Schierle, E. Rees, M. Erdelyi, C. F. Kaminski, T. Ando, M. Mishima , ”CYK4 Promotes Antiparallel Microtubule Bundling by Optimizing MKLP1 Neck Conformation”, PloS Biol. 13(4): e1002121 (26 pp). doi:10.1371/journal.pbio.1002121 (Link)
5.	M. Shibata, T. Uchihashi, T. Ando and R. Yasuda "Long-tip high-speed atomic force microscopy for nanometer-scale imaging in live cells" Scientific Reports 5, 8724 (7 pp) (2015). DOI:10.1038/srep08724 (Link)
6.	M. Imamura, T. Uchihashi, T. Ando, A. Leifert, U. Simon, A. D. Malay and J. G. Heddle "Probing structural dynamics of an artificial protein cage using high-speed atomic force microscopy", Nano Lett. 15 (2): 1331–1335 (2015). DOI: 10.1021/nl5045617 (Link)
7.	Kien Xuan Ngo, Noriyuki Kodera, Eisaku Katayama, Toshio Ando and Taro Q.P. Uyeda "Cofilin-induced unidirectional cooperative conformational changes in actin filaments revealed by high-speed AFM", e-Life 4:e04806 (2015) DOI: 10.7554/eLife.04806#sthash.zRRaKrcb.dpuf (Link) (PDF) (Supplements)
8.	N. Kodera, K. Uchida, T. Ando, and S. Aizawa "Two-ball structure of the flagellar hook-length control protein FliK as revealed by high-speed atomic force microscopy", J. Mol. Biol. 427, 406-414 (2015) doi: 10.1016/j.jmb.2014.11.007 (Link)

2014
1.	S. Ishino, T. Yamagami, M. Kitamura, N. Kodera, T. Mori, S. Sugiyama, T. Ando, N. Goda, T. Tenno, H. Hiroaki, and Y. Ishino "Multiple Interactions of the Intrinsically Disordered Region between the N-terminal Helicase and C-terminal Nuclease Domains of the Archaeal Hef Protein", J. Biol. Chem. 289: 21627-21639 (2014). DOI:10.1074/jbc.M114.554998 (Link)
2.	J. Preiner, N. Kodera, J. Tang, A. Ebner, M. Brameshuber, D. Blaas, N. Gelbmann, H. Gruber, T. Ando, and P. Hinterdorfer, "IgGs are made for walking on bacterial and viral surfaces", Nature Communications 5: 4394 (8 pp) (2014) DOI:10.1038/ncomms5394 (Link)
3.	T. Ando, "High-speed AFM imaging", Curr. Opin. Struct. Biol. 28: 63-68 (2014). DOI:10.1016/j.sbi.2014.07.011 (Link)
4.	N. Kodera and T. Ando, "The path to visualization of walking myosin V by high-speed atomic force microscopy", Biophys. Rev. 6:237-260 (2014). DOI:10.1007/s12551-014-0141-7 (PDF) (Link) (Open access) (Link2)
5.	Y. Shibafuji, A. Nakamura, T. Uchihashi, N. Sugimoto, S. Fukuda, H. Watanabe, M. Samejima, T. Ando, H. Noji, A. Koivula, K. Igarashi, and R. Iino, Single-molecule imaging analysis of elementary reaction steps of Trichoderma Reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cell. J. Biol. Chem. 289:14056-14065 (2014) DOI:10.1074/jbc.M113.546085. (Link)
6.	T. Ando, T. Uchihashi, and S. Scheuring, "Filming biomolecular processes by high-speed atomic force microscopy", Chem. Rev. 114(6):3120-3188 (2014). DOI:10.1021/cr4003837. (PDF: Low resolution) (PDF: High resolution) (Link) (Selected to be featured in ACS Editors' Choice; Open access sponsored by ACS publications)
7.	A. Nakamura, H. Watanabe, T. Ishida, T. Uchihashi, M. Wada, T. Ando, K. Igarashi, and M. Samejima, "Trade-off between processivity and hydrolytic velocity of cellobiohydrolases at the surface of crystalline cellulose", J. Am. Chem. Soc. 136:4584-4592 (2014). DOI:10.1021/ja4119994. (Link)
8.	K. Igarashi, T. Uchihashi, T. Uchiyama, H. Sugimoto, M. Wada, K. Suzuki, S. Sakuda, T. Ando, T. Watanabe, and M. Samejima, "Two-way traffic of glycoside hydrolase family 18 processive chitinases on crystalline chitin", Nature Communications 5: 3975 (2014). DOI:10.1038/ncomms4975 (Link)

2013
1.	Kentaro Noi, Daisuke Yamamoto, Shingo Nishikori, Ken-ichi Arita-Morioka, Toshio Ando and Teru Ogura, "High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p97", Structure 21: 1992-2002 (2013). DOI: 10.1016/j.str.2013.08.017 (Link)
2.	Neval Yilmaz, Taro Yamada, Peter Greimel, Takayuki Uchihashi, Toshio Ando, and Toshihide Kobayashi, "Real-Time Visualization of Assembling of a Sphingomyelin-Specific Toxin", Biophys. J. 105, 1397-1405 (2013). DOI: 10.1016/j.bpj.2013.07.052 (Link)
3.	S. Fukuda, T. Uchihashi, R. Iino, Y. Okazaki, M. Yoshida, K. Igarashi, and T. Ando, "High-speed atomic force microscope combined with single-molecule fluorescence microscope", Rev. Sci. Instrum. 84, 073706 (2013). DOI: 10.1063/1.4813280 (Link)
4.	M. Hashimoto, N. Kodera, Y. Tsunaka, M. Oda, M. Tanimoto, T. Ando, K. Morikawa, and S. Tate, "Phosphorylation-Coupled Intramolecular Dynamics of Unstructured Regions in Chromatin Remodeler FACT", Biophys. J. 104: 2222-2234 (2013) DOI: 10.1016/j.bpj.2013.04.007 (Link)
5.	H. Watanabe, T. Uchihashi, T. Kobashi, M. Shibata, J. Nishiyama, R. Yasuda, and T. Ando, "Wide-area scanner for high-speed atomic force microscopy", Rev. Sci. Instrum. 84: 053702 (2013). DOI: 10.1063/1.4803449 (Link)
6.	T. Ando, "High-speed atomic force microscopy of protein dynamics: myosin on actin and rotary enzyme F1-ATPase", Microscopy & Analysis 27(3):10-13 (2013). (Link)
7.	H. Yamashita, K. Inoue, M. Shibata, T. Uchihashi, J. Sasaki, H. Kandori, and T. Ando, "Role of trimer-trimer interaction of bacteriorhodopsin studied by optical spectroscopy and high-speed atomic force microscopy", J. Struct. Biol. 184: 2-11 (2013). DOI: 10.1016/j.jsb.2013.02.011 (Link)
8.	T. Ando, "Molecular machines directly observed by high-speed atomic force microscopy", FEBS Lett. 587: 997-1007 (2013). DOI: 10.1016/j.febslet.2012.12.024, (Link) (PDF) Open access
9.	T. Ando, T. Uchihashi, and N. Kodera, "High-speed AFM and applications to biomolecular systems", Annu. Rev. Biophys. 42: 393-414(2013).DOI: 10.1146/annurev-biophys-083012-130324 (Link)
10.	T. Ando, "High-speed atomic force microscopy", Microscopy 62(1):81-93 (2013). DOI: 10.1093/jmicro/dfs093 (Link)

2012
1.	T. Ando, T. Uchihashi, and N. Kodera, "High-speed atomic force microscopy", Jpn. J. Appl. Phys. 51:08KA02 (15 pp) (2012). DOI: 10.1143/JJAP.51.08KA02 (Link)
2.	H. Yamashita, A. Taoka, T. Uchihashi, T. Asano, T. Ando, and Y. Fukumori, "Single molecule imaging on living bacterial cell surface by high-speed AFM", J. Mol. Biol. 422(2) 300-309 (2012). DOI: 10.1016/j.jmb.2012.05.018 (Link) (Movie1, Movie2, Movie3, Movie4, Supplementary data)
3.	T. Uchihashi, N. Kodera, and T. Ando, "Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy", Nature Protocols 7(6): 1193-1206 (2012).DOI: 10.1038/nprot.2012.047 (Link)
4.	K. Igarashi, T. Uchihashi, A. Koivula, M. Wada, S. Kimura, M. Penttilä, T. Ando, and M. Samejima, "Visualization of cellobiohydrolase I from Trichoderma reesei moving on crystalline cellulose using high-speed atomic force microscopy", Methods Enzymol. 510, 169-182 (2012). DOI: 10.1016/B978-0-12-415931-0.00009-4 (Link)
5.	T. Nojima, H. Konno, N. Kodera, K. Seio, H. Taguchi, M. Yoshida, “Nano-scale alignment of proteins on a flexible DNA backbone”, PLoS One 7(12): e52534 (5 pp) (2012). (Link)
6.	T. Ando, "High-speed atomic force microscopy coming of age", Nanotechnology 23: 062001 (27 pp) (2012). DOI: 10.1088/0957-4484/23/6/062001 (Link) (Editorial) This article has been selected by the editors of Nanotechnology for inclusion in the exclusive "Highlights 2012" collection.
7.	T. Ando and N. Kodera, "Visualization of mobility by atomic force microscopy", Methods Mol. Biol. 896: 57-69 (2012). DOI: 10.1007/978-1-4614-3704-8_4 (Link)

2011
1.	T. Uchihashi and T. Ando, "High-speed atomic force microscopy and biomolecular processes", Methods Mol. Biol. 736: 285-300 (2011). DOI: 10.1007/978-1-61779-105-5_18 (Link)
2.	K. Igarashi, T. Uchihashi, A. Koivula, M. Wada, S. Kimura, T. Okamoto, M. Penttilä, T. Ando, and M. Samejima, "Traffic jams reduce hydrolytic efficiency of cellulase on cellulose surface", Science 333:1279-1282 (2011). DOI 10.1126/science.1208386 (Link) (Supplementary Info) (Movie 1) (Movie 2) (Movie 3) (Movie 4) (Movie 5) (Movie 6) (Movie 7) (Movie 8) (Movie 9) (Science Japan)
3.	A. Laisne, M. Ewald, T. Ando, E. Lesniewska, and D. Pompon, "Self-assembly properties and dynamic of synthetic proteo-nucleic building blocks in solution and on surfaces", Bioconjugate Chem. 22:1824-1834 (2011) DOI: 10.1021/bc2002264 (Link).
4.	A. Miyagi, T. Ando and Y. L. Lyubchenko, "Dynamics of nucleosomes assessed with time-lapse high speed atomic force microscopy", Biochemistry 50: 7901-7908 (2011). DOI: 10.1021/bi200946z (this paper is highlighted in Biochemistry) (Link)
5.	T. Uchihashi, R. Iino, T. Ando, and H. Noji, "High-speed atomic force microscopy reveals rotary catalysis of rotorless F1-ATPase, Science 333, 755-758 (2011). DOI: 10.1126/science.1205510 (Link) (Supplementary_Inf) (Movie 1) (Movie 2) (Movie 3) (Movie 4) (Movie 5) (Movie 6) (Movie 7) (Movie 8) (perspectives) (Science Japan)
6.	M. Shibata, T. Uchihashi, H. Yamashita, H. Kandori, and T. Ando, "Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy", Angewande Chemie International edition 50: 4410–4413 (2011). DOI: 10.1002/anie.201007544 (Link) (Supplementary_Info) (Movie 1) (Movie 2) (Movie 3) (Movie 4)
7.	Y. L. Lyubchenko, L. S. Shlyakhtenko, and T. Ando, "Imaging of nucleic acids with atomic force microscopy", Methods 54: 274-283 (2011). DOI: 10.1016/j.ymeth.2011.02.001 (Link)
8.	S. Inoue, T. Uchihashi, D. Yamamoto, and T. Ando, Direct observation of surfactant aggregate behavior on a mica surface using high-speed atomic force microscopy, Chem. Commun. 47: 4974–4976 (2011) DOI: 10.1039/C0CC05762B (Link)

2010
1.	N. Kodera, D. Yamamoto, R. Ishikawa, and T. Ando, Video imaging of walking myosin V by high-speed atomic force microscopy. Nature 468: 72-76 (2010). DOI: 10.1038/nature09450 (Link) (Movie 1) (Movie 2) (Movie 3) (Movie 4) (Movie 5) (Movie 6) (supplementary info) (News & View)
2.	P.-E. Milhiet, D. Yamamoto, O. Berthoumieu, P. Dosset, Ch. Le Grimellec, J.-M. Verdier, S. Marchal, and T. Ando, “Deciphering the structure, growth and assembly of amyloid-like fibrils using high-speed atomic force microscopy”, PLos One 5 (11): e13240 (8 pp) (2010). DOI: 10.1371/journal.pone.0013240 (Link) (Movie S1, Movie S2, Movie S3) (supplementary info)
3.	D. Yamamoto, T. Uchihashi, N. Kodera, H. Yamashita, S. Nishikori, T. Ogura, M. Shibata, and T. Ando, High-speed atomic force microscopy techniques for observing dynamic biomolecular processes, Methods Enzymol. 475 (Part B): 541-564 (2010). DOI: 10.1016/S0076-6879(10)75020-5 (Link)
4.	D. Yamamoto, A. Taoka, T. Uchihashi, H. Sasaki, H. Watanabe, T. Ando, and Y. Fukumori, Visualization and structural analysis of the bacterial magnetic organelle magnetosome using atomic force microscopy, Proc. Natl. Acad. Sci. USA 107: 9382-9387 (2010). DOI: 10.1073/pnas.1001870107 (Link) (supplementary info + Movie)
5.	S. Sugimoto, K. Yamanaka, S. Nishikori, A. Miyagi, T. Ando, and T. Ogura, AAA+ chaperone ClpX regurates dynamics of prokaryotic cytoskeletal protein FtsZ, J. Biol. Chem. 285: 6648-6657 (2010). DOI: 10.1074/jbc.M109.080739 (Link)
6.	M.-C. Giocondi, D. Yamamoto, E. Lesniewska, P.-E. Milhiet, T. Ando, and Ch. Le Grimellec, Surface topography of membrane domains, Biochim. Biophys. Acta.-Biomembranes 1798: 703-718 (2010). DOI: 10.1016/j.bbamem.2009.09.015 (Link)
7.	M. Shibata, H. Yamashita, T. Uchihashi, H. Kandori, and T. Ando, High-speed atomic force microscopy shows dynamic molecular processes in photo-activated bacteriorhodopsin, Nature Nanotechnology 5, 208 - 212 (2010). DOI: 10.1038/nnano.2010.7 (Link) (Supplementary Information + Movies)

2009
1.	I. Casuso, N. Kodera, C. Le Grimellec, T. Ando, and S. Scheuring, Contact mode high-resolution high-speed atomic force microscopy movies of purple membrane, Biophys J, 97 (5): 1354-1361 (2009). DOI: 10.1016/j.bpj.2009.06.019 (Link)
2.	D. Yamamoto, N. Nagura, S. Omote, M. Taniguchi, and T. Ando, Streptavidin 2D crystal substrates for visualizing biomolecular processes by atomic force microscopy, Biophys. J. 97(8): 2358–2367 (2009). DOI: 10.1016/j.bpj.2009.07.046 (Link)
3.	H. Yamashita, K. Voïtchovsky, T. Uchihashi, S. Antoranz Contera, J. F. Ryan, and T. Ando, Dynamics of bacteriorhodopsin 2D crystal observed by high-speed atomic force microscopy, J. Struct. Biol. 167: 153-158 (2009). DOI: 10.1016/j.jsb.2009.04.011 (Link) (Supplementary Movies)
4.	K. Shinohara, N. Kodera, and T. Ando, Single-molecule imaging of a micro-Brownian motion of a chiral helical π-conjugated polymer as a molecular spring driven by thermal fluctuations.Chem Lett. 38(7): 690-691 (2009). DOI: 10.1246/cl.2007.1378 (Link)

2008
1.	T. Ando, T. Uchihashi, and T. Fukuma, High-speed atomic force microscopy for nano-visualization of dynamic biomolecular processes, Prog. Surf. Sci. 83: 337-437 (2008). DOI: 10.1016/j.progsurf.2008.09.001 (Link)
2.	D. Yamamoto, T. Uchihashi, N. Kodera, and T. Ando, Anisotropic diffusion of point defects in two-dimensional crystal of streptavidin observed by high-speed atomic force microscopy, Nanotechnology 19: 384009 (9 pp) (2008). DOI: 10.1088/0957-4484/19/38/384009 (Link) (Supplementary Movie)
3.	A. Miyagi, Y. Tsunaka, T. Uchihashi, K. Mayanagi, S. Hirose, K. Morikawa, and T. Ando, Visualization of intrinsically disordered regions of proteins by high-speed atomic force microscopy, Chem. Phys. Chem. 9(13):1859-1866 (2008). DOI: 10.1002/cphc.200800210 (Link)
4.	T. Fukuma, Y. Okazaki, N. Kodera, T. Uchihashi, and T. Ando, High resonance frequency force microscope scanner using inertia balance support, Appl. Phys. Lett. 92:243119 (2008). DOI: 10.1063/1.2951594 (Link)
5.	T. Ando, T. Uchihashi, N. Kodera, D. Yamamoto, M. Taniguchi, A. Miyagi, and H. Yamashita, High-speed AFM and nano-visualization of biomolecular processes, Pflügers Archiv -Eur. J. Physiol. 456:211-225 (2008). DOI: 10.1007/s00424-007-0406-0 (Link)
6.	T. Ando, Control techniques in high-speed atomic force microscopy, Proceedings of the American Control Conference, art. no. 4586984, pp. 3194-3200 (2008). DOI: 10.1109/ACC.2008.4586984 (PDF File)
7.	H. Iwase, H. Choi, M. Akabori, T. Suzuki, S. Yamada, D. Yamamoto and T. Ando, Fabrication of 3D micro-cantilevers based on MBE-grown strained semiconductor layers, Physica E: Low-dimensional Systems and Nanostructures 40(6): 2210-2213 (2008). DOI: 10.1016/j.physe.2007.11.016

2007
1.	T. Ando, T. Uchihashi, N. Kodera, D. Yamamoto, M. Taniguchi, A. Miyagi, and H. Yamashita, High-speed atomic force microscopy for observing dynamic biomolecular processes, J. Mol. Recognit. 20:448-458 (2007). DOI: 10.1002/jmr.843 (Link)
2.	H. Yamashita, T. Uchihashi, N. Kodera, A. Miyagi, D. Yamamoto, T. Ando, Tip-sample distance control using photo-thermal actuation of a small cantilever for high-speed atomic force microscopy, Rev. Sci. Instrum. 78:083702 (5 pp) (2007). DOI: 10.1063/1.2766825 (Link)
3.	K. Shinohara, N. Kodera, and T. Ando, Single molecular imaging of a micro-Brownian motion and a bond scission of a supramolecular chiral π-conjugated, Chem. Lett. 36: 1378-1379 (2007). DOI: 10.1246/cl.2007.1378 (Link)
4.	S. Morita, H. Yamada, and T. Ando, Japan AFM roadmap 2006, Nanotechnology 18:08401 (10 pages) (2007). DOI: 10.1088/0957-4484/18/8/084001 (Link)

2006
1.	T. Uchihashi, H. Yamashita, and T. Ando, Fast phase imaging in liquids using a rapid scan atomic force microscope, Appl. Phys. Lett. 89:213112 (3 pages) (2006). (Link)
2.	N. Kodera, M. Sakashita, and T. Ando, Dynamic proportional-integral-differential controller for high-speed atomic force microscopy, Rev. Sci. Instrum. 77(8):083704 (7 pages) (2006). (Link)
3.	H. Koide, T. Kinoshita, Y. Tanaka, S. Tanaka, N. Nagura, G. Meyer zu Hörste, A. Miyagi, and T. Ando, Identification of the specific IQ motif of myosin V from which calmodulin dissociates in the presence of Ca²⁺, Biochemistry 45(38):11598-11604 (2006). (Link)
4.	M. Yokokawa, C. Wada, T. Ando, N. Sakai , A. Yagi, S.H. Yoshimura, and K. Takeyasu, Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL, EMBO J. 25:4567-4576 (2006). (Link)
5.	M. Yokokawa, S.H. Yoshimura, Y. Naito, T. Ando, A. Yagi, N. Sakai, and K. Takeyasu, Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease, IEE Proc Nanobiotechnol. 153(4):60-66 (2006).
6.	T. Ando, T. Uchihashi, N. Kodera, A. Miyagi, R. Nakakita, H. Yamashita, and M. Sakashita, High-speed atomic force microscopy for studying the dynamic behavior of protein molecules at work, Jpn. J. Appl. Phys. 45(3B):1897-1903 (2006). (Link)
7.	T. Uchihashi, N. Kodera, H. Itoh, H. Yamashita, and T. Ando, Feed-forward control for high-speed AFM imaging of biomolecules, Jpn. J. Appl. Phys. 45(3B):1904-1908 (2006). (Link)

2005
1.	T. Ando, T. Uchihashi, N. Kodera, A. Miyagi, R. Nakakita, H. Yamashita, and K. Matada, High-speed AFM for studying the dynamic behavior of protein molecules at work, e-J. Surf. Sci. Nanotechnol. 3:384-392 (2005). (Link) (Supplementary Movies)
2.	N. Kodera, H. Yamashita, and T. Ando, Active damping of the scanner for high-speed atomic force microscopy, Rev. Sci. Instrum. 76: 053708 (5pages) (2005). (Link)

2000~2004
1.	N. Kodera, T. Kinoshita, T. Ito, and T. Ando, High-resolution imaging of myosin motor in action by a high-speed atomic force microscope, Adv. Exp. Med. Biol. 538:119-127 (2003).
2.	R. Ishikawa, T. Sakamoto, T. Ando, S. Higashi-Fujime, and K. Kohama, Polarized actin bundles formed by human fascin-1: Their sliding and disassembly on myosin II and myosin V in vitro, J. Neurochem. 87:676-685 (2003). (Link)
3.	T. Ando, N. Kodera, Y. Naito, T. Kinoshita, K. Furuta, and Y.Y. Toyoshima, A high-speed atomic force microscope for studying biological macromolecules in action, ChemPhysChem 4:1196-1202 (2003). (Link)
4.	T. Ando, N. Kodera, D. Maruyama, E. Takai, K. Saito, and A. Toda, A High-speed atomic force microscope for studying biological macromolecules in action, Jpn. J. Appl. Phys. 41:4851-4856 (2002). (Link)
5.	T. Ando, N. Kodera, E. Takai, D. Maruyama, K. Saito, and A. Toda, A High-speed atomic force microscope for studying biological macromolecules, Proc. Natl. Acad. Sci. USA 98:12468-12472 (2001). (Link)
6.	I. Amitani, T. Sakamoto, and T. Ando, Link between the enzymatic and mechanical behavior in an actomyosin motor, Biophys. J. 80:379-397 (2001). (Link)
7.	T. Sakamoto, I. Amitani, E. Yokota, and T. Ando, Direct observation of processive movement by individual myosin V molecules, Biochem. Biophys. Res. Commun. 272:586-590 (2000). (Link)