|
Go
to PubMed for Ando's recent publications
| 2018 |
| 1. |
T.
Brouns, H. De Keersmaecker, S. Konrad, N. Kodera, T. Ando, J. Lipfert,
S. De Feyter, and W. Vanderlinden, "Free energy landscape and
dynamics of supercoiled DNA by high-speed atomic force
microscopy", ACS Nano (in press)
|
| 2. |
T. Ando et al.,
"Topical Review: The 2018 correlative microscopy techniques
roadmap", J. Phys. D: Appl. Phys. 51, 443001 (42pp) (2018). DOI:
10.1088/1361-6463/aad055 Open
Access (PDF)
|
| 3. |
T. Mori, S. Sugiyama, M.
Byme, C. H. Johnson, T. Uchihashi, T. Ando, "Revealing circadian
mechanisms of integration and resilience by visualizing clock proteins
working in real time", Nature Commun. 9:3245 (13 pages) (2018).
DOI:
10.1038/s41467-018-05438-4. Oepn Access
(PDF)
(Link)
|
| 4. |
T.
Uchihashi, Y. Watanabe, Y. Nakazaki, T. Yamasaki, H. Watanabe, T.
Maruno, K. Ishii, S. Uchiyama, C. Song,
K. Murata, R. Iino, and T. Ando, "Dynamic
structural states of ClpB involved in its disaggregation
function", Nature Commun. 9:2147 (12 pages) (2018). DOI:
10.1038/s41467-018-04587-w. Open Access (PDF)
(Link).
|
| 5. |
T. Ravula, D. Ishikuro, N. Kodera, T.
Ando, G. Anantharamaiah, A. Ramamoorthy, "Real time
monitoring of lipid exchange via fusion of peptide based lipid-nanodiscs",
Chem. Mater 30, 3204-3207 (2018). DOI: 10.1021/acs.chemmater.8b00946
|
| 6. |
T. Umakoshi, H. Udaka, T. Uchihashi, T.
Ando, M. Suzuki, "Quantum-dot antibody conjugation visualized at
the single-molecule scale with high-speed aomic force
microscopy", Colloids and Surfaces B: Biointerfaces 167: 267-274
(2018). DOI: 10.1016/j.colsurfb.2018.04.015 (Link)
|
| 7. |
D. Noshiro and T. Ando,
"Substrate protein dependence
of GroEL-GroES interaction cycle revealed by high-speed AFM
imaging", Philosophical Transactions B 373: 20170180 (2018). DOI:
/10.1098/rstb.2017.0180. Open Access (PDF)
(Link)
Supplementary
Information, Movie1,
Movie
2, Movie
3
|
| 8. |
N. Terahara, Y. Inoue, N.
Kodera, Y. V. Morimoto, T. Uchihashi, K. Imada, T. Ando, K. Namba, and
T. Minamino, "Insight into structural remodeling of the FlhA ring
responsible for bacterial flagellar type III protein export",
Sci. Adv. 4 (4), eaao7054.DOI: 10.1126/sciadv.aao7054 (Link) |
| 9. |
T. Haruyama,
T. Uchihashi, Y. Yamada, N. Kodera, T. Ando
and H. Konno, "Negatively charged
lipids are essential
for functional and structural switch of human 2-Cys peroxiredoxin
II", J. Mol. Biol. 430(5):602-610 (2018). DOI: /10.1016/j.jmb.2017.12.020
(Link) |
| 10. |
T. Takeda, T. Kozai, H.
Yang, D. Ishikuro, K. Seyama, Y Kumagai, T. Abe, H. Yamada, T.
Uchihashi, T. Ando, K. Takei, "Dynamic clustering of
dynamin-amphiphysin helices regulates membrane constriction and
fission coupled with GTP hydrolysis", e-Life 7:e30246
(19 pages) (2018). DOI: /10.7554/eLife.30246 (Link) |
| 2017 |
| 1. |
T. Ando, High-speed
atomic
force
microscopy
and
its
future
prospects. Biophys. Rev. 10:285–292
(2018). DOI: 10.1007/s12551-017-0356-5 (Shared PDF)
This is a part of Special Issue on "Biomolecules to
Bionanommechanics -- Fumio Arisaka's 70th Birthday".
|
| |
Mikihiro
Shibata, Hiroshi Nishimasu, Noriyuki Kodera, Seiichi Hirano, Toshio
Ando, Takayuki Uchihashi & Osamu Nureki. Real-space and real-time
dynamics of CRISPR-Cas9 visualized by high-speed atomic force
microscopy. Nat. Commun. 8, 1430
(9 pp) (2017). DOI:
10.1038/s41467-017-01466-8, Open Access (PDF) |
| 3. |
N. Terahara, N. Kodera, T.
Uchihashi, T. Ando, K. Namba, T Minamino, "Na+-induced
structurak transition of MotPS for stator assembly of the Bacillus
fragellar motor", Sci. Adv. 3, eaao4119 (9 pp) (2017). DOI:
10.1126/sciadv.aao4119 (Link) |
| 4. |
M. Shibata, H.
Watanabe, T. Uchihashi, T. Ando, R. Yasuda, “High-speed atomic force
microscopy imaging of live mammalian cells”, Biophys. Physicobiol.
14, 127-135 (2017).
DOI: 10.2142/biophysico.14.0_127
|
| 5. |
S. Watanabe and T. Ando,
"High-speed XYZ nanopositioner for scanning ion conductance
microscopy", Appl. Phys. Lett. 111, 113106 (2017); doi:
10.1063/1.4993296 |
| 6. |
S.
Matsui, S. Hiroshige, T. Kureha, M. Shibata, T. Uchihashi, D. Suzuki,
“Fast Adsorption of Soft Hydrogel Microspheres on Solid Surfaces in
Aqueous Solutions” Angew. Chem. Int. Ed. 56, 12146-12149 (2017).. |
| 7. |
J. J. Keya, D. Inoue,
Y. Suzuki, T. Kozai, D. Ishikuro, N. Kodera, T. Uchihashi, A. M. R.
Kabir, M. Endo, K. Sada, and A. Kakugo, “High-Resolution Imaging of
a Single Gliding Protofilament of Tubulins by HS-AFM”, Sci. Rep. 7,
6166 (2017).
|
| 8. |
A. Sumino, T. Uchihashi, S. Oiki, “Oriented
Reconstitution of the Full-Length KcsA Potassium Channel in a Lipid
Bilayer for AFM Imaging”, J. Phys. Chem. Lett. 8, 785-793 (2017).
|
| 9. |
T. Ando, "Directly
watching biomolecules in action by high-speed atomic force microscopy", Biophys. Rev. 9, 421-429 (2017).
DOI:
10.1007/s12551-017-0281-7 This is a part of a Special Issue for IUPAB Edinburgh Congress
2017, (Link) |
| 10. |
M S
Mohamed, A. Kobayashi, A. Taoka, T. Watanabe-Nakayama, Y. Kikuchi, M.
Hazawa, T. Minamoto,Y. Fukumori, N. Kodera, T. Uchihashi, T. Ando, and
R. W. Wong, “High-speed atomic force microscopy reveals loss of
nuclear pore resilience as a dying code in colorectal cancer cells”,
ACS Nano 11, 5567−5578 (2017). DOI: 10.1021/acsnano.7b00906
|
| 11. |
Yves
F. Dufrêne, Toshio Ando, Ricardo Garcia, David Alsteens, David
Martinez-Martin, Andreas Engel, Christoph Gerber and Daniel J. Müller,
"Imaging modes of atomic force microscopy for application of
molecular and cell biology", Nat. Nanotechnol. 12, 295-307
(2017). DOI: 10.1038/NNANO.2017.45 (Link) |
| 12. |
T. Ando, "High-speed Atomic Force Microscopy for Observing Protein Molecules in Dynamic Action",
Proceedings of SPIE
10328, Selected Papers from the 31st International Congress on
High-Speed Imaging and Photonics, 103281R (February 20, 2017).
DOI:10.1117/12.2268795 |
| 2016 |
| 1. |
K. Inoue, S. Ito, Y. Kato, Y. Nomura, M. Shibata, T. Uchihashi, S. Tsunoda, and H. Kandori, “Natural light-driven inward proton pump.” Nat. Commun. 7:
13415 (2016). DOI: 10.1038/ncomms13415 |
| 2. |
D.
Yamamoto and T. Ando
Chaperonin
GroEL-GroES functions as both alternating and non-alternating engines,
J. Mol. Biol. 428, 3090-3101 (2016). DOI: 10.1016/j.jmb.2016.06.017 (Link)
(Movie S1) |
| 3. |
Hayashi
Yamamoto, Yuko Fujioka, Sho W. Suzuki, Daisuke Noshiro, Hironori
Suzuki, Chika Kondo-Kakuta, Yayoi Kimura, Hisashi Hirano, Toshio Ando,
Nobuo N. Noda, Yoshinori Ohsumi
The
Intrinsically Disordered Protein Atg13 Mediates Supramolecular
Assembly of Autophagy Initiation Complexes, Dev. Cell 38:86-99 (2016).
DOI: 10.1016/j.devcel.2016.06.015. (PDF)
(Open Access) |
| 4. |
T.
Watanabe-Nakayama, M. Itami, N. Kodera, T. Ando and H. Konno
High-speed
atomic force microscopy reveals strongly polarized movement of
clostridial collagenase along collagen fibrils, Sci. Rep. 6:28975
(2016). DOI: 10.1038/srep28975. (Link) |
| 5. |
T.
Uchihashi, H. Watanabe, S. Fukuda, M. Shibata and T. Ando
"Functional
extension of high-speed atomic force microscopy", Ultramicroscopy
160, 182-196 (2016). DOI: 10.1016/j.ultramic.2015.10.017 (Link) |
| 2015 |
| 1. |
Wilaiwan
Sriwimol, Aratee Aroonkesorn, Somsri Sakdee, Chalermpol Kanchanawarin,
Takayuki Uchihashi, Toshio Ando and Chanan Angsuthanasombat
"Potential
pre-pore trimer formation by the Bacillus thuringiensis
mosquito-specific toxin: Molecular insights into a critical
prerequisite of membrane-bound monomers", J. Biol. Chem.
290 (34), 20793-20803 (2015). DOI: 10.1074/jbc.M114.627554 (Link)
|
| 2. |
Shingo
Fukuda, Takayuki Uchihashi, Toshio Ando
"Method
of mechanical holding of cantilever chip for tip-scan high-speed
atomic force microscopy", Rev. Sci. Instrum. 86, 063703
(2015). DOI: 10.1063/1.4922381
(Link)
|
| 3. |
Kouta
Takeda, Takayuki Uchihashi, Hiroki Watanabe, Takuya Ishida, Kiyohiko
Igarashi, Nobuhumi Nakamura, Hiroyuki Ohno,
"Real-time
dynamic adsorption processes of cytochrome c on an electrode observed
through electrochemical high-speed atomic force microscopy", PLoS
One e0116685 (10 pages), (2015). DOI:10.1371/journal.pone.0116685 (Link)
|
| 4. |
T. Davies,
N. Kodera, G. S. Kaminski Schierle, E. Rees, M. Erdelyi, C. F.
Kaminski, T. Ando, M. Mishima
, ”CYK4 Promotes Antiparallel Microtubule Bundling by
Optimizing MKLP1 Neck Conformation”, PloS Biol. 13(4): e1002121 (26
pp).
doi:10.1371/journal.pbio.1002121
(Link)
|
| 5. |
M.
Shibata, T. Uchihashi, T. Ando and R. Yasuda
"Long-tip
high-speed atomic force microscopy for nanometer-scale imaging in live
cells"
Scientific
Reports 5, 8724 (7 pp) (2015). DOI:10.1038/srep08724
(Link)
|
| 6. |
M.
Imamura, T. Uchihashi, T. Ando, A. Leifert, U. Simon, A. D. Malay and
J. G. Heddle
"Probing
structural dynamics of an artificial protein cage using high-speed
atomic force microscopy", Nano Lett. 15 (2): 1331–1335 (2015). DOI:
10.1021/nl5045617 (Link) |
| 7. |
Kien
Xuan Ngo, Noriyuki Kodera, Eisaku Katayama, Toshio Ando and Taro Q.P. Uyeda
"Cofilin-induced
unidirectional cooperative conformational changes in actin filaments revealed
by high-speed AFM", e-Life 4:e04806 (2015) DOI:
10.7554/eLife.04806#sthash.zRRaKrcb.dpuf
(Link)
(PDF) (Supplements) |
| 8. |
N.
Kodera, K. Uchida, T. Ando, and S. Aizawa
"Two-ball
structure of the flagellar hook-length control protein FliK as revealed
by high-speed atomic force microscopy", J. Mol. Biol. 427,
406-414 (2015) doi:
10.1016/j.jmb.2014.11.007 (Link) |
|
2014 |
|
1. |
S. Ishino, T. Yamagami, M. Kitamura, N. Kodera, T. Mori, S. Sugiyama, T. Ando, N. Goda, T. Tenno, H. Hiroaki, and Y. Ishino
"Multiple Interactions of the Intrinsically Disordered Region between the N-terminal Helicase and C-terminal Nuclease Domains
of the Archaeal Hef Protein", J. Biol. Chem. 289: 21627-21639 (2014). DOI:10.1074/jbc.M114.554998 (Link)
|
|
2. |
J. Preiner, N. Kodera, J. Tang, A. Ebner, M.
Brameshuber, D. Blaas, N. Gelbmann, H. Gruber, T. Ando, and P.
Hinterdorfer,
"IgGs are made for walking on bacterial and viral
surfaces", Nature Communications 5: 4394 (8 pp) (2014) DOI:10.1038/ncomms5394 (Link)
|
|
3. |
T.
Ando, "High-speed AFM imaging",
Curr.
Opin. Struct. Biol. 28: 63-68 (2014). DOI:10.1016/j.sbi.2014.07.011 (Link) |
|
4. |
N.
Kodera and T. Ando, "The path to visualization of walking myosin V by
high-speed atomic force microscopy", Biophys. Rev. 6:237-260
(2014). DOI:10.1007/s12551-014-0141-7 (PDF)
(Link)
(Open access) (Link2) |
|
5. |
Y. Shibafuji, A. Nakamura, T. Uchihashi,
N. Sugimoto, S. Fukuda, H. Watanabe, M. Samejima, T. Ando, H. Noji, A. Koivula,
K. Igarashi, and R. Iino, Single-molecule
imaging analysis of elementary reaction steps of Trichoderma Reesei
cellobiohydrolase I (Cel7A) hydrolyzing crystalline cell. J. Biol. Chem. 289:14056-14065
(2014) DOI:10.1074/jbc.M113.546085. (Link) |
|
6. |
T. Ando,
T. Uchihashi, and S. Scheuring,
"Filming biomolecular processes by high-speed
atomic force microscopy", Chem. Rev. 114(6):3120-3188 (2014). DOI:10.1021/cr4003837. (PDF:
Low resolution) (PDF:
High resolution) (Link)
(Selected to be
featured in ACS Editors' Choice; Open access
sponsored by ACS
publications) |
|
7. |
A.
Nakamura, H. Watanabe, T. Ishida, T. Uchihashi, M.
Wada, T. Ando, K. Igarashi, and M. Samejima,
"Trade-off between processivity and hydrolytic
velocity of cellobiohydrolases at the surface of
crystalline cellulose", J. Am. Chem. Soc. 136:4584-4592 (2014).
DOI:10.1021/ja4119994.
(Link) |
|
8. |
K. Igarashi, T. Uchihashi, T. Uchiyama, H. Sugimoto, M. Wada, K. Suzuki, S.
Sakuda, T. Ando, T. Watanabe, and M. Samejima, "Two-way traffic of
glycoside hydrolase family 18 processive chitinases on crystalline
chitin", Nature Communications
5: 3975 (2014).
DOI:10.1038/ncomms4975 (Link)
|
|
2013 |
|
1. |
Kentaro Noi, Daisuke Yamamoto, Shingo Nishikori,
Ken-ichi Arita-Morioka, Toshio Ando and Teru Ogura, "High-speed atomic
force microscopic observation of ATP-dependent rotation of the AAA+ chaperone
p97", Structure 21: 1992-2002 (2013).
DOI: 10.1016/j.str.2013.08.017
(Link) |
|
2. |
Neval Yilmaz, Taro Yamada, Peter
Greimel, Takayuki
Uchihashi, Toshio
Ando, and Toshihide
Kobayashi, "Real-Time Visualization of Assembling of a Sphingomyelin-Specific Toxin", Biophys.
J. 105, 1397-1405 (2013). DOI: 10.1016/j.bpj.2013.07.052 (Link) |
|
3. |
S. Fukuda, T. Uchihashi,
R. Iino, Y. Okazaki, M. Yoshida, K. Igarashi, and T. Ando, "High-speed
atomic force microscope combined with single-molecule
fluorescence microscope", Rev. Sci. Instrum.
84, 073706 (2013). DOI: 10.1063/1.4813280 (Link) |
|
4. |
M. Hashimoto, N. Kodera, Y. Tsunaka,
M. Oda, M. Tanimoto, T.
Ando, K. Morikawa, and S. Tate,
"Phosphorylation-Coupled Intramolecular Dynamics of Unstructured Regions
in Chromatin Remodeler FACT", Biophys. J. 104:
2222-2234 (2013) DOI: 10.1016/j.bpj.2013.04.007 (Link) |
|
5. |
H. Watanabe, T. Uchihashi,
T. Kobashi, M. Shibata, J. Nishiyama,
R. Yasuda, and T. Ando, "Wide-area scanner for high-speed atomic force
microscopy", Rev. Sci. Instrum. 84: 053702
(2013). DOI: 10.1063/1.4803449 (Link) |
|
6. |
T. Ando, "High-speed atomic force microscopy of
protein dynamics: myosin on actin and rotary enzyme F1-ATPase",
Microscopy & Analysis 27(3):10-13 (2013). (Link) |
|
7. |
H. Yamashita, K. Inoue, M. Shibata, T. Uchihashi, J. Sasaki, H. Kandori,
and T. Ando, "Role of trimer-trimer
interaction of bacteriorhodopsin studied by optical
spectroscopy and high-speed atomic force microscopy", J. Struct. Biol. 184: 2-11 (2013).
DOI: 10.1016/j.jsb.2013.02.011 (Link) |
|
8. |
T. Ando, "Molecular
machines directly observed
by high-speed atomic force microscopy", FEBS Lett.
587: 997-1007 (2013). DOI: 10.1016/j.febslet.2012.12.024, (Link)
(PDF)
Open
access |
|
9. |
T. Ando, T. Uchihashi, and
N. Kodera, "High-speed AFM and applications to biomolecular
systems", Annu. Rev. Biophys.
42: 393-414(2013).DOI: 10.1146/annurev-biophys-083012-130324 (Link) |
|
10. |
T. Ando, "High-speed atomic force
microscopy", Microscopy 62(1):81-93 (2013). DOI: 10.1093/jmicro/dfs093 (Link) |
|
2012 |
|
1. |
T. Ando,
T. Uchihashi, and N. Kodera, "High-speed
atomic force microscopy", Jpn. J.
Appl. Phys. 51:08KA02 (15 pp) (2012).
DOI: 10.1143/JJAP.51.08KA02
(Link)
|
|
2. |
H. Yamashita, A. Taoka, T. Uchihashi, T. Asano,
T. Ando, and Y. Fukumori, "Single molecule
imaging on living bacterial cell surface by high-speed AFM", J. Mol.
Biol. 422(2) 300-309 (2012). DOI: 10.1016/j.jmb.2012.05.018
(Link)
(Movie1,
Movie2,
Movie3,
Movie4,
Supplementary data) |
|
3. |
T. Uchihashi, N. Kodera, and T. Ando, "Guide to video
recording of structure dynamics and dynamic processes of proteins by
high-speed atomic force microscopy", Nature Protocols 7(6):
1193-1206 (2012).DOI:
10.1038/nprot.2012.047
(Link) |
|
4. |
K.
Igarashi, T. Uchihashi, A. Koivula, M. Wada, S. Kimura, M. Penttilä, T. Ando, and M. Samejima,
"Visualization of cellobiohydrolase I from Trichoderma reesei moving on
crystalline cellulose using high-speed atomic force microscopy", Methods
Enzymol. 510, 169-182 (2012).
DOI:
10.1016/B978-0-12-415931-0.00009-4
(Link) |
|
5. |
T. Nojima, H. Konno, N. Kodera, K. Seio,
H. Taguchi, M. Yoshida, “Nano-scale alignment of
proteins on a flexible DNA backbone”, PLoS
One 7(12): e52534 (5 pp) (2012). (Link) |
|
6. |
T. Ando,
"High-speed atomic force microscopy coming of age", Nanotechnology 23: 062001 (27 pp)
(2012).
DOI:
10.1088/0957-4484/23/6/062001
(Link) (Editorial)
This article has been selected by the editors of Nanotechnology
for inclusion in the exclusive "Highlights 2012" collection. |
|
7. |
T. Ando
and N. Kodera, "Visualization of mobility by atomic force
microscopy", Methods Mol. Biol. 896: 57-69 (2012). DOI:
10.1007/978-1-4614-3704-8_4
(Link) |
|
2011 |
|
1. |
T. Uchihashi
and T. Ando, "High-speed atomic force microscopy and biomolecular
processes", Methods Mol. Biol. 736: 285-300 (2011). DOI:
10.1007/978-1-61779-105-5_18
(Link) |
|
2. |
K. Igarashi, T. Uchihashi, A. Koivula, M. Wada, S.
Kimura, T. Okamoto, M. Penttilä, T. Ando, and M.
Samejima, "Traffic jams reduce hydrolytic efficiency
of cellulase on cellulose surface", Science 333:1279-1282 (2011).
DOI
10.1126/science.1208386
(Link) (Supplementary
Info) (Movie 1) (Movie
2) (Movie 3) (Movie
4) (Movie 5) (Movie
6) (Movie 7) (Movie
8) (Movie 9) (Science Japan) |
|
3. |
A. Laisne, M. Ewald, T. Ando,
E. Lesniewska, and D. Pompon,
"Self-assembly properties and dynamic of synthetic proteo-nucleic
building blocks in solution and on surfaces", Bioconjugate
Chem. 22:1824-1834 (2011)
DOI:
10.1021/bc2002264
(Link). |
|
4. |
A. Miyagi, T. Ando and Y. L.
Lyubchenko, "Dynamics of nucleosomes assessed
with time-lapse high speed atomic force microscopy", Biochemistry 50: 7901-7908 (2011).
DOI:
10.1021/bi200946z
(this paper is highlighted in Biochemistry)
(Link) |
|
5. |
T. Uchihashi,
R. Iino, T. Ando, and H. Noji, "High-speed
atomic force microscopy reveals rotary catalysis of rotorless
F1-ATPase, Science 333, 755-758 (2011). DOI:
10.1126/science.1205510
(Link) (Supplementary_Inf)
(Movie 1) (Movie 2) (Movie 3) (Movie 4) (Movie 5) (Movie 6) (Movie 7) (Movie 8) (perspectives) (Science Japan) |
|
6. |
M. Shibata, T. Uchihashi, H.
Yamashita, H. Kandori, and T. Ando, "Structural changes in
bacteriorhodopsin in response to alternate illumination observed by
high-speed atomic force microscopy", Angewande Chemie International
edition 50: 4410–4413 (2011). DOI: 10.1002/anie.201007544 (Link) (Supplementary_Info) (Movie 1) (Movie 2) (Movie 3) (Movie 4) |
|
7. |
Y. L.
Lyubchenko, L. S. Shlyakhtenko, and T. Ando, "Imaging of nucleic acids
with atomic force microscopy", Methods 54: 274-283 (2011). DOI:
10.1016/j.ymeth.2011.02.001
(Link) |
|
8. |
S. Inoue,
T. Uchihashi, D. Yamamoto, and T. Ando, Direct observation of surfactant
aggregate behavior on a mica surface using high-speed atomic force
microscopy, Chem. Commun. 47: 4974–4976 (2011) DOI:
10.1039/C0CC05762B
(Link) |
|
2010 |
|
1. |
N. Kodera,
D. Yamamoto, R. Ishikawa, and T. Ando, Video imaging of walking myosin V by
high-speed atomic force microscopy. Nature 468: 72-76 (2010). DOI:
10.1038/nature09450
(Link)
(Movie
1) (Movie
2) (Movie
3) (Movie
4) (Movie
5) (Movie
6) (supplementary info) (News & View) |
|
2. |
P.-E.
Milhiet, D. Yamamoto, O. Berthoumieu, P. Dosset, Ch. Le Grimellec, J.-M.
Verdier, S. Marchal, and T. Ando, “Deciphering the structure, growth and
assembly of amyloid-like fibrils using high-speed atomic force microscopy”, PLos
One 5 (11): e13240 (8 pp) (2010). DOI: 10.1371/journal.pone.0013240 (Link)
(Movie S1, Movie S2, Movie S3) (supplementary info) |
|
3. |
D. Yamamoto, T. Uchihashi, N.
Kodera, H. Yamashita, S. Nishikori, T. Ogura, M. Shibata, and T. Ando,
High-speed atomic force microscopy techniques for observing dynamic
biomolecular processes, Methods Enzymol. 475 (Part B): 541-564
(2010). DOI:
10.1016/S0076-6879(10)75020-5
(Link) |
|
4. |
D. Yamamoto, A. Taoka, T.
Uchihashi, H. Sasaki, H. Watanabe, T. Ando, and Y. Fukumori, Visualization
and structural analysis of the bacterial magnetic organelle magnetosome using
atomic force microscopy, Proc. Natl. Acad. Sci. USA 107:
9382-9387 (2010). DOI:
10.1073/pnas.1001870107
(Link)
(supplementary info
+ Movie) |
|
5. |
S. Sugimoto, K. Yamanaka, S.
Nishikori, A. Miyagi, T. Ando, and T. Ogura, AAA+ chaperone ClpX regurates
dynamics of prokaryotic cytoskeletal protein FtsZ, J. Biol. Chem. 285:
6648-6657 (2010). DOI:
10.1074/jbc.M109.080739
(Link) |
|
6. |
M.-C.
Giocondi, D. Yamamoto, E.
Lesniewska, P.-E. Milhiet, T. Ando, and Ch. Le Grimellec, Surface topography
of membrane domains, Biochim. Biophys. Acta.-Biomembranes 1798:
703-718 (2010). DOI:
10.1016/j.bbamem.2009.09.015
(Link) |
|
7. |
M. Shibata, H. Yamashita, T.
Uchihashi, H. Kandori, and T. Ando, High-speed atomic force microscopy shows
dynamic molecular processes in photo-activated bacteriorhodopsin, Nature
Nanotechnology 5, 208 - 212
(2010).
DOI:
10.1038/nnano.2010.7
(Link) (Supplementary Information
+
Movies) |
|
2009 |
|
1. |
I. Casuso,
N. Kodera, C. Le Grimellec, T. Ando, and S. Scheuring, Contact mode
high-resolution high-speed atomic force microscopy movies of purple
membrane, Biophys J, 97 (5): 1354-1361 (2009).
DOI:
10.1016/j.bpj.2009.06.019
(Link) |
|
2. |
D.
Yamamoto, N. Nagura, S. Omote, M. Taniguchi, and T. Ando, Streptavidin 2D
crystal substrates for visualizing biomolecular processes by atomic force
microscopy, Biophys. J. 97(8): 2358–2367 (2009). DOI:
10.1016/j.bpj.2009.07.046
(Link) |
|
3. |
H.
Yamashita, K. Voïtchovsky, T. Uchihashi, S. Antoranz Contera, J. F. Ryan, and
T. Ando, Dynamics of bacteriorhodopsin 2D crystal observed by high-speed
atomic force microscopy, J. Struct. Biol. 167: 153-158
(2009). DOI:
10.1016/j.jsb.2009.04.011
(Link) (Supplementary Movies) |
|
4. |
K. Shinohara, N. Kodera, and T. Ando, Single-molecule
imaging of a micro-Brownian motion of a chiral helical π-conjugated polymer
as a molecular spring driven by thermal fluctuations.Chem Lett. 38(7):
690-691 (2009). DOI:
10.1246/cl.2007.1378
(Link) |
|
2008 |
|
1. |
T. Ando, T. Uchihashi, and T.
Fukuma, High-speed atomic force microscopy for nano-visualization of dynamic
biomolecular processes, Prog. Surf. Sci. 83: 337-437 (2008). DOI:
10.1016/j.progsurf.2008.09.001
(Link) |
|
2. |
D.
Yamamoto, T. Uchihashi, N. Kodera, and T. Ando, Anisotropic diffusion of
point defects in two-dimensional crystal of streptavidin observed by
high-speed atomic force microscopy, Nanotechnology 19: 384009 (9
pp) (2008). DOI:
10.1088/0957-4484/19/38/384009
(Link) (Supplementary Movie) |
|
3. |
A. Miyagi, Y. Tsunaka, T. Uchihashi, K. Mayanagi,
S. Hirose, K. Morikawa, and T. Ando, Visualization of intrinsically
disordered regions of proteins by high-speed atomic force microscopy, Chem.
Phys. Chem. 9(13):1859-1866 (2008). DOI:
10.1002/cphc.200800210
(Link) |
|
4. |
T. Fukuma,
Y. Okazaki, N. Kodera, T. Uchihashi, and T. Ando, High resonance frequency
force microscope scanner using inertia balance support, Appl. Phys. Lett. 92:243119 (2008).
DOI: 10.1063/1.2951594
(Link) |
|
5. |
T. Ando, T.
Uchihashi, N. Kodera, D. Yamamoto, M. Taniguchi, A. Miyagi, and H. Yamashita,
High-speed AFM and nano-visualization of biomolecular processes, Pflügers
Archiv -Eur. J. Physiol. 456:211-225 (2008). DOI:
10.1007/s00424-007-0406-0
(Link) |
|
6. |
T. Ando,
Control techniques in high-speed atomic force microscopy, Proceedings of
the American Control Conference, art. no.
4586984, pp. 3194-3200 (2008). DOI:
10.1109/ACC.2008.4586984
(PDF File) |
|
7. |
H. Iwase, H. Choi, M. Akabori, T.
Suzuki, S. Yamada, D. Yamamoto and T. Ando, Fabrication of 3D
micro-cantilevers based on MBE-grown strained semiconductor layers, Physica
E: Low-dimensional Systems and Nanostructures 40(6): 2210-2213
(2008). DOI:
10.1016/j.physe.2007.11.016
|
|
2007 |
|
1. |
T. Ando, T. Uchihashi, N. Kodera,
D. Yamamoto, M. Taniguchi, A. Miyagi, and H. Yamashita, High-speed atomic
force microscopy for observing dynamic biomolecular processes, J. Mol.
Recognit. 20:448-458 (2007). DOI:
10.1002/jmr.843
(Link) |
|
2. |
H.
Yamashita, T. Uchihashi, N. Kodera, A. Miyagi, D. Yamamoto, T. Ando,
Tip-sample distance control using photo-thermal actuation of a small cantilever
for high-speed atomic force microscopy, Rev. Sci. Instrum. 78:083702
(5 pp) (2007). DOI:
10.1063/1.2766825
(Link) |
|
3. |
K.
Shinohara, N. Kodera, and T. Ando, Single molecular imaging of a
micro-Brownian motion and a bond scission of a supramolecular chiral
π-conjugated, Chem. Lett. 36: 1378-1379 (2007). DOI:
10.1246/cl.2007.1378
(Link) |
|
4. |
S. Morita,
H. Yamada, and T. Ando, Japan AFM roadmap 2006, Nanotechnology 18:08401
(10 pages) (2007). DOI:
10.1088/0957-4484/18/8/084001
(Link) |
|
2006 |
|
1. |
T. Uchihashi, H. Yamashita, and T. Ando, Fast phase imaging in liquids using a
rapid scan atomic force microscope, Appl. Phys. Lett. 89:213112
(3 pages) (2006). (Link) |
|
2. |
N. Kodera,
M. Sakashita, and T. Ando, Dynamic proportional-integral-differential
controller for high-speed atomic force microscopy, Rev. Sci. Instrum. 77(8):083704
(7 pages) (2006). (Link) |
|
3. |
H. Koide,
T. Kinoshita, Y. Tanaka, S. Tanaka, N. Nagura, G. Meyer zu Hörste, A. Miyagi,
and T. Ando, Identification of the specific IQ motif of myosin V from which
calmodulin dissociates in the presence of Ca2+, Biochemistry 45(38):11598-11604 (2006).
(Link) |
|
4. |
M.
Yokokawa, C. Wada, T. Ando, N. Sakai , A. Yagi, S.H.
Yoshimura, and K. Takeyasu, Fast-scanning atomic force microscopy reveals the
ATP/ADP-dependent conformational changes of GroEL, EMBO J. 25:4567-4576
(2006). (Link) |
|
5. |
M.
Yokokawa, S.H. Yoshimura, Y. Naito, T. Ando, A. Yagi, N. Sakai, and K.
Takeyasu, Fast-scanning atomic force microscopy reveals the molecular
mechanism of DNA cleavage by ApaI endonuclease, IEE Proc Nanobiotechnol.
153(4):60-66 (2006). |
|
6. |
T. Ando, T.
Uchihashi, N. Kodera, A. Miyagi, R. Nakakita, H. Yamashita, and M. Sakashita,
High-speed atomic force microscopy for studying the dynamic behavior of
protein molecules at work, Jpn. J. Appl. Phys. 45(3B):1897-1903
(2006). (Link) |
|
7. |
T.
Uchihashi, N. Kodera, H. Itoh, H. Yamashita, and T. Ando,
Feed-forward control for high-speed AFM imaging of
biomolecules, Jpn. J. Appl. Phys. 45(3B):1904-1908
(2006). (Link) |
|
2005 |
|
1. |
T. Ando, T.
Uchihashi, N. Kodera, A. Miyagi, R. Nakakita, H. Yamashita, and K. Matada,
High-speed AFM for studying the dynamic behavior of protein molecules at
work, e-J. Surf. Sci. Nanotechnol. 3:384-392 (2005). (Link)
(Supplementary
Movies) |
|
2. |
N. Kodera, H. Yamashita, and T.
Ando, Active damping of the scanner for high-speed atomic force microscopy, Rev.
Sci. Instrum. 76: 053708 (5pages) (2005). (Link) |
|
2000~2004 |
|
1. |
N. Kodera,
T. Kinoshita, T. Ito, and T. Ando, High-resolution imaging of myosin motor in
action by a high-speed atomic force microscope, Adv. Exp. Med. Biol. 538:119-127
(2003). |
|
2. |
R.
Ishikawa, T. Sakamoto, T. Ando, S. Higashi-Fujime, and K. Kohama, Polarized
actin bundles formed by human fascin-1: Their sliding and disassembly on
myosin II and myosin V in vitro, J. Neurochem. 87:676-685
(2003). (Link) |
|
3. |
T. Ando, N.
Kodera, Y. Naito, T. Kinoshita, K. Furuta, and Y.Y. Toyoshima, A high-speed
atomic force microscope for studying biological macromolecules in action, ChemPhysChem 4:1196-1202 (2003).
(Link) |
|
4. |
T. Ando, N.
Kodera, D. Maruyama, E. Takai, K. Saito, and A. Toda, A High-speed
atomic force microscope for studying biological macromolecules in action, Jpn.
J. Appl. Phys. 41:4851-4856 (2002). (Link) |
|
5. |
T. Ando, N.
Kodera, E. Takai, D. Maruyama, K. Saito, and A. Toda, A High-speed
atomic force microscope for studying biological macromolecules, Proc.
Natl. Acad. Sci. USA 98:12468-12472 (2001). (Link) |
|
6. |
I. Amitani,
T. Sakamoto, and T. Ando, Link between the enzymatic and mechanical behavior
in an actomyosin motor, Biophys. J. 80:379-397 (2001). (Link) |
|
7. |
T.
Sakamoto, I. Amitani, E. Yokota, and T. Ando, Direct observation of
processive movement by individual myosin V molecules, Biochem. Biophys.
Res. Commun. 272:586-590 (2000). (Link) |
|